PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0780.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 740aa    MW: 81686.1 Da    PI: 7.152
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0780.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.56.9e-25155256199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae++       +  ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v
  SapurV1A.0012s0780.1.p 155 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQ--QRPSQELVAKDLHGSEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAV 239
                             99****************************9743..345679********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   + +++el+++v+r+
  SapurV1A.0012s0780.1.p 240 LFL--RGEDGELRLGVRRA 256
                             ***..449999*****996 PP

2Auxin_resp114.59.3e-38281362182
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                             +a+a+st+s+F+++YnPr s+seF+++++k++k+l++++svGmR+km+feted++err++G++ g+s+ldp+ Wp+SkW++L
  SapurV1A.0012s0780.1.p 281 VANAISTRSAFRIYYNPRPSSSEFIIPFNKFMKSLDQSFSVGMRIKMRFETEDAAERRYTGLINGISELDPTGWPGSKWKCL 362
                             689******************************************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-40148257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-42149275IPR015300DNA-binding pseudobarrel domain
CDDcd100179.37E-23153255No hitNo description
PfamPF023621.2E-22155256IPR003340B3 DNA binding domain
PROSITE profilePS5086313.535155257IPR003340B3 DNA binding domain
SMARTSM010192.7E-23155257IPR003340B3 DNA binding domain
PfamPF065071.4E-32281362IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MVGMIDLNTT EEDETTPSSG SLSSPSSSSA ASALSASGSG SGISSPVCLE LWHACAGPLI  60
SLPRRGSIFV YFPQGHLEQL PDLPLGIHGL PPHVFCRVVD VQLHAEAAND DVYAQVSLVP  120
ESKEIEQKLR EGIFEGDGEE EDVEATAKTT TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC  180
FPPLDYTQQR PSQELVAKDL HGSEWKFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL  240
FLRGEDGELR LGVRRAAQVK CGPTFPALWN QQLNQSSLTD VANAISTRSA FRIYYNPRPS  300
SSEFIIPFNK FMKSLDQSFS VGMRIKMRFE TEDAAERRYT GLINGISELD PTGWPGSKWK  360
CLLVRWDDME ANRHSRVSPW EVEPSGPGPV SSSNTFMAPG LKRSRSGLPS LKAEFPIPDG  420
IGASDFRESS RFQEVLQGQE IMSFNTLYDD VDGQNQHPSE VRSWFPGSRG SGIAVIGSGI  480
RGSIPTSENS YKGTGFNESY RFHKVLQGQE IFPLSPYRRN PNANEARENC GPGLSDGVQR  540
QSSRNGWSTM MQGYNTQMRP PTQVSSPSSV LKFQHASNQV SNPTSFFNFN DHEEHRTNTQ  600
RWFCGPEKHG GKFKLSSHSD PGLRGERQCS TNPYALSHEH LQHGISQPGV AQSAFRSSQD  660
LVSCKSNCRL FGFSLTEDRH AVNKEDNMTS MTSPLNPESS FLPRVGEQLH PKPPAINNAV  720
GSSCTKAILQ HHAENYRIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_B1e-115303842354Auxin response factor 1
4ldy_A1e-115303842354Auxin response factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027759.10.0PREDICTED: auxin response factor 3-like
SwissprotO236610.0ARFC_ARATH; Auxin response factor 3
TrEMBLB9H2P50.0B9H2P5_POPTR; Auxin response factor
STRINGPOPTR_0004s04970.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45763355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein